Muskegon Lake was designated an Area of Concern because of severe environmental impairments from direct discharge of industrial and municipal wastes. Since diversion of all municipal and industrial wastewater in 1973, few studies have assessed ecological changes associated with improved water quality. We examined distributions and long-term changes in the benthic macroinvertebrate community at 27 sites. Distributions were evaluated relative to distance from the river mouth, water depth, grain size, and known areas of sediment contamination. Temporal changes were assessed relative to wastewater diversion. Oligochaeta and Chironomidae dominated the community, and the oligochaete trophic condition index indicated that, in 1999, the lake was generally mesotrophic to eutrophic. Cluster analysis resulted in four distinct site groupings. A cluster of sites near the river mouth had the highest total density (9,375 m⁻²) and lowest diversity (Shannon Weaver Index 1.05) suggesting an enriched habitat. A site cluster in the south central region had the lowest oligochaete density (2,782 m⁻²), lowest oligochaete trophic condition index scores (1.00), and highest diversity (2.24), suggesting the best habitat. The chironomid community in this site cluster was dominated by predatory species, possibly resulting from high concentrations of heavy metals at some sites. Densities of all major taxonomic groups increased significantly between 1972 and 1999. Decreasing proportions of oligochaetes (0.85 to 0.68) and increasing diversity suggest improved environmental conditions over this period. Evidence suggests that changes in Muskegon Lake's benthic community were more a result of wastewater diversion than Dreissena invasion.